STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpD2-methylcitrate dehydratase. (500 aa)    
Predicted Functional Partners:
prpB
Methylisocitrate lyase.
 
  
 0.993
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
 
  
 0.969
CCG09821.1
Transcriptional regulator, XRE family.
 
  
 0.845
CCG07810.1
Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.791
CCG08629.1
Thioesterase superfamily.
       0.680
CCG09526.1
Fumarase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.656
CCG06789.1
Propionyl-CoA carboxylase.
 
    0.542
mdh
Malate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
  
 0.500
CCG06920.1
Carboxyl transferase.
  
    0.483
CCG09304.1
Carboxyl transferase.
  
    0.483
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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