STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cas1-2CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (318 aa)    
Predicted Functional Partners:
CCG08635.1
CRISPR-associated protein, Cas2 family.
 
 
 0.998
CCG08639.1
CRISPR-associated protein, Cse4 family.
 
  
 0.966
CCG08638.1
CRISPR-associated protein, Cas5e family.
 
  
 0.959
CCG08637.1
CRISPR-associated protein, CT1974.
 
  
 0.950
CCG07917.1
CRISPR-associated protein, CT1975 family.
 
  
 0.874
CCG07919.1
CRISPR-associated protein, CT1972 family.
 
  
 0.873
CCG08640.1
CRISPR-associated protein, Cse1 family.
 
  
 0.873
CCG07916.1
CRISPR-associated protein, CT1976 family.
 
  
 0.849
cas3
CRISPR-associated helicase Cas3, putative.
 
  
 0.819
CCG08641.1
CRISPR-associated helicase, Cas3 family.
 
  
 0.819
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.