STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08660.13-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenase. (284 aa)    
Predicted Functional Partners:
CCG08659.1
Enoyl-CoA hydratase.
 
 0.994
CCG07390.1
Methylmalonate-semialdehyde dehydrogenase (Acylating).
 
 
 0.949
CCG07953.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.929
cbbA
Fructose-bisphosphate aldolase, class II, Calvin cycle subtype.
 
    0.911
CCG07391.1
Aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.903
CCG06919.1
Biotin carboxylase.
  
 
 0.873
CCG08466.1
Acyl-coenzyme A synthetase/AMP-(Fatty) acid ligase.
  
 
 0.834
CCG07629.1
AMP-dependent synthetase and ligase.
  
 
 0.831
acsA
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.831
CCG06920.1
Carboxyl transferase.
  
 
 0.819
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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