STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08759.1Substrate-binding protein of ABC transporter. (430 aa)    
Predicted Functional Partners:
CCG08186.1
Urea transport system permease protein; Ureashort-chain amide or branched-chain amino acid uptake ABC transporter permease protein, possibly fusion protein; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.979
CCG08187.1
Permease of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.979
CCG09686.1
Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.977
CCG08189.1
ATP-binding component of ABC transporter.
 
 
 0.975
CCG08188.1
ATP-binding component of ABC transporter.
 
  
 0.965
CCG08185.1
Periplasmic urea/short-chain amide-binding protein.
  
  
 
0.910
CCG07844.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
    
 0.767
ntrC
NtrC protein; Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes.
    
 0.754
CCG07324.1
Two component, sigma54 specific, transcriptional regulator, Fis family.
    
 0.686
CCG08758.1
Sensor protein.
  
 
 0.664
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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