STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08877.1Transcriptional regulator, XRE family. (183 aa)    
Predicted Functional Partners:
CCG08395.1
Putative uncharacterized protein.
  
     0.690
CCG07621.1
Putative uncharacterized protein.
  
     0.651
CCG08716.1
Sensor protein.
  
   
 0.634
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.628
CCG07790.1
Double-transmembrane region-like.
  
   
 0.594
CCG06718.1
Putative uncharacterized protein.
  
     0.584
CCG06565.1
Double-transmembrane region-like.
  
   
 0.581
CCG07141.1
Cellulase-like protein.
  
     0.571
CCG09118.1
HemY-like.
  
     0.566
CCG09114.1
Permease YjgP/YjgQ.
  
     0.535
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.