STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08887.1Extracellular solute-binding protein, family 5. (221 aa)    
Predicted Functional Partners:
CCG08888.1
Extracellular solute-binding protein, family 5.
     0.994
CCG08886.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.968
oppC
Oligopeptide transport system permease protein OppC.
 
 
 0.964
CCG08883.1
ABC-type uncharacterized transport system,duplicated ATPase component; Belongs to the ABC transporter superfamily.
 
  
 0.942
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.853
CCG08889.1
TRAP-type C4-dicarboxylate transport system,large permease component.
       0.773
CCG08890.1
Tripartite ATP-independent periplasmic transporter, DctQ component.
       0.773
CCG09433.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.675
CCG09432.1
Binding-protein-dependent transport systems inner membrane component.
 
 
 0.642
CCG08891.1
Bacterial extracellular solute-binding protein,family 7.
  
  
 0.597
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.