STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG08902.1Type II secretion system protein E. (454 aa)    
Predicted Functional Partners:
CCG08901.1
Type II secretion system protein.
 
 0.998
CCG08348.1
Putative uncharacterized protein.
 
 
 0.852
CCG08349.1
Type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.835
CCG08138.1
Ankyrin.
  
 
 0.792
CCG08954.1
Putative uncharacterized protein.
  
 
 0.792
CCG09407.1
Putative uncharacterized protein.
  
 
 0.792
CCG08900.1
Putative uncharacterized protein.
       0.783
CCG08899.1
Unnamed protein product.
       0.773
CCG08449.1
Putative uncharacterized protein.
  
 
 0.731
CCG09584.1
Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
  
 0.706
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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