STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG09232.1Antibiotic biosynthesis monooxygenase. (108 aa)    
Predicted Functional Partners:
CCG09234.1
Putative uncharacterized protein.
 
     0.830
hemN
Oxygen-independent coproporphyrinogen-III oxidase, putative.
  
  
 0.800
CCG09235.1
NAD-dependent epimerase/dehydratase.
  
    0.777
hmuT
Hemin-binding periplasmic protein HmuT,putative.
 
     0.705
hmuU1
Hemin transport system permease protein HmuU1,putative; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.682
CCG09228.1
TonB-dependent hemoglobin.
 
    0.656
fecE
Iron(III) dicitrate transport ATP-binding protein fecE; Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system.
 
     0.649
CCG08486.1
ABC transporter component.
  
     0.406
CCG09833.1
Putative uncharacterized protein.
 
     0.404
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.