STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG09237.1TonB-dependent receptor. (834 aa)    
Predicted Functional Partners:
CCG09240.1
PepSY-associated TM helix.
 
  
 0.866
CCG09236.1
Transcriptional regulator, IclR family.
 
    0.864
CCG09241.1
PepSY-associated TM helix.
  
  
 0.796
tonB
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.794
CCG09238.1
Unnamed protein product.
       0.773
CCG09239.1
Putative uncharacterized protein.
       0.773
CCG09497.1
Periplasmic binding protein, putative.
 
  
 0.710
CCG08383.1
Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.708
CCG08389.1
Putative uncharacterized protein.
  
 
 0.708
CCG07417.1
Peptidase M10A and M12B, matrixin and adamalysin.
   
 
 0.554
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.