CCG09689.1 protein (Pararhodospirillum photometricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CCG09689.1

Putative uncharacterized protein. (465 aa)

Predicted Functional Partners:

CCG09448.1

0.938

CCG07361.1

0.934

CCG08276.1

0.927

CCG07460.1

0.926

CCG09364.1

0.903

CCG06691.1

0.894

CCG08836.1

0.867

CCG08277.1

0.853

CCG09501.1

0.853

CCG09263.1

0.828

Your Current Organism:

Pararhodospirillum photometricum

NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCG06691.1	CCG07460.1	RSPPHO_00065	RSPPHO_00834	Putative diguanylate phosphodiesterase (EAL domain).	Predicted signal transduction protein.	0.550
CCG06691.1	CCG08277.1	RSPPHO_00065	RSPPHO_01651	Putative diguanylate phosphodiesterase (EAL domain).	Sensor protein.	0.796
CCG06691.1	CCG08836.1	RSPPHO_00065	RSPPHO_02210	Putative diguanylate phosphodiesterase (EAL domain).	Hypothetical 1041 kDa protein in hypE 3'region.	0.772
CCG06691.1	CCG09263.1	RSPPHO_00065	RSPPHO_02637	Putative diguanylate phosphodiesterase (EAL domain).	Sensor protein.	0.538
CCG06691.1	CCG09364.1	RSPPHO_00065	RSPPHO_02738	Putative diguanylate phosphodiesterase (EAL domain).	Sensor protein.	0.777
CCG06691.1	CCG09501.1	RSPPHO_00065	RSPPHO_02875	Putative diguanylate phosphodiesterase (EAL domain).	Sensor protein.	0.796
CCG06691.1	CCG09689.1	RSPPHO_00065	RSPPHO_03063	Putative diguanylate phosphodiesterase (EAL domain).	Putative uncharacterized protein.	0.894
CCG07361.1	CCG07460.1	RSPPHO_00735	RSPPHO_00834	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Predicted signal transduction protein.	0.528
CCG07361.1	CCG08277.1	RSPPHO_00735	RSPPHO_01651	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Sensor protein.	0.849
CCG07361.1	CCG09263.1	RSPPHO_00735	RSPPHO_02637	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Sensor protein.	0.882
CCG07361.1	CCG09364.1	RSPPHO_00735	RSPPHO_02738	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Sensor protein.	0.811
CCG07361.1	CCG09501.1	RSPPHO_00735	RSPPHO_02875	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Sensor protein.	0.850
CCG07361.1	CCG09689.1	RSPPHO_00735	RSPPHO_03063	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	Putative uncharacterized protein.	0.934
CCG07460.1	CCG06691.1	RSPPHO_00834	RSPPHO_00065	Predicted signal transduction protein.	Putative diguanylate phosphodiesterase (EAL domain).	0.550
CCG07460.1	CCG07361.1	RSPPHO_00834	RSPPHO_00735	Predicted signal transduction protein.	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	0.528
CCG07460.1	CCG08276.1	RSPPHO_00834	RSPPHO_01650	Predicted signal transduction protein.	Response regulator containing a CheY-like receiver domain and an HD-GYP domain.	0.462
CCG07460.1	CCG08277.1	RSPPHO_00834	RSPPHO_01651	Predicted signal transduction protein.	Sensor protein.	0.924
CCG07460.1	CCG08836.1	RSPPHO_00834	RSPPHO_02210	Predicted signal transduction protein.	Hypothetical 1041 kDa protein in hypE 3'region.	0.849
CCG07460.1	CCG09263.1	RSPPHO_00834	RSPPHO_02637	Predicted signal transduction protein.	Sensor protein.	0.888
CCG07460.1	CCG09364.1	RSPPHO_00834	RSPPHO_02738	Predicted signal transduction protein.	Sensor protein.	0.947