STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG09720.1Transcriptional regulator, XRE family. (143 aa)    
Predicted Functional Partners:
CCG08395.1
Putative uncharacterized protein.
  
     0.690
CCG07621.1
Putative uncharacterized protein.
  
     0.681
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.675
CCG07790.1
Double-transmembrane region-like.
  
   
 0.603
CCG06565.1
Double-transmembrane region-like.
  
   
 0.593
CCG06718.1
Putative uncharacterized protein.
  
     0.592
CCG08716.1
Sensor protein.
  
   
 0.580
CCG08427.1
Double-transmembrane region-like.
  
   
 0.535
CCG06717.1
Putative uncharacterized protein.
  
     0.524
rnpA
Ribonuclease P protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.522
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.