STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG09828.1Transcriptional regulator, MarR family. (153 aa)    
Predicted Functional Partners:
CCG09831.1
Putative uncharacterized protein.
 
     0.752
fliP
Flagellar transport protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family.
   
    0.734
CCG09829.1
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
     
 0.631
CCG09118.1
HemY-like.
  
     0.625
CCG07234.1
Helicase-like.
  
     0.611
CCG09830.1
tRNA/rRNA methyltransferase (SpoU).
       0.610
CCG07763.1
SMF protein.
  
    0.597
CCG07631.1
Putative uncharacterized protein.
  
     0.573
CCG07949.1
Putative uncharacterized protein.
  
     0.568
CCG08267.1
Putative uncharacterized protein.
  
    0.549
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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