STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCG06578.1ABC-type protease/lipase transport system, ATPase and permease components. (359 aa)    
Predicted Functional Partners:
CCG08957.1
Secretion ATP-binding protein-like protein.
 
     0.959
CCG07063.1
Type I secretion membrane fusion protein, HlyD.
 
 
 0.948
CCG09711.1
ABC transporter, transmembrane region.
 
 
 0.903
CCG09712.1
ABC transporter, transmembrane region.
 
 
 0.881
CCG08936.1
Putative outer membrane secretion protein-like protein.
 
  
 0.834
CCG07417.1
Peptidase M10A and M12B, matrixin and adamalysin.
 
  
 0.734
CCG09580.1
Toxin secretion ATP-binding protein.
 
 
0.731
CCG07822.1
ABC transporter component.
 
      0.715
CCG09787.1
ABC transporter component.
 
      0.691
CCG09058.1
Membrane-fusion protein.
 
 
 0.671
Your Current Organism:
Pararhodospirillum photometricum
NCBI taxonomy Id: 1150469
Other names: P. photometricum DSM 122, Pararhodospirillum photometricum DSM 122, Rhodospirillum photometricum DSM 122
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.