STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrdAProtein yrdA. (174 aa)    
Predicted Functional Partners:
can
Carbonic anhydrase 2.
    
 0.933
CCG43091.1
Carbonic anhydrase.
    
 0.933
cbbM
Ribulose bisphosphate carboxylase; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type II subfamily.
    
 
 0.911
argC
Putative N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
       0.827
CCG40951.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.689
trxA
Thioredoxin 1, redox factor; Function of homologous gene experimentally demonstrated in an other organism; carrier; Belongs to the thioredoxin family.
    
   0.679
CCG41606.1
Putative thioredoxin; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
    
   0.679
CCG40505.1
Dihydroorotase; Function of strongly homologous gene; enzyme.
  
  
 0.592
CCG43058.1
UDP-N-acetylglucosamine 2-epimerase homolog; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
    
  0.589
pyrC
Dihydroorotase (DHOase); Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate; Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class I DHOase subfamily.
  
  
 0.552
Your Current Organism:
Phaeospirillum molischianum
NCBI taxonomy Id: 1150626
Other names: P. molischianum DSM 120, Phaeospirillum molischianum DSM 120, Phaeospirillum molischianum str. DSM 120, Phaeospirillum molischianum strain DSM 120
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