STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluERibosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family. (181 aa)    
Predicted Functional Partners:
der
GTP-binding protein, essential for cell growth; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.697
cmk
Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.662
CCG40941.1
Predicted transcriptional regulator containing the HTH domain; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.627
CCG40827.1
Putative exodeoxyribonuclease III (xthA); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.605
CCG40934.1
Exodeoxyribonuclease III (Exonuclease III) (EXO III) (AP endonuclease VI) (fragment).
  
    0.605
CCG40935.1
Exodeoxyribonuclease III (fragment).
  
    0.605
CCG42325.1
Parvulin-like peptidyl-prolyl isomerase.
     
 0.581
CCG42203.1
Small GTP-binding protein.
  
  
 0.564
pheT
Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase beta chain); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.522
CCG42323.1
Hypothetical protein; No homology to any previously reported sequences.
       0.513
Your Current Organism:
Phaeospirillum molischianum
NCBI taxonomy Id: 1150626
Other names: P. molischianum DSM 120, Phaeospirillum molischianum DSM 120, Phaeospirillum molischianum str. DSM 120, Phaeospirillum molischianum strain DSM 120
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