STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH16175.1Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (193 aa)    
Predicted Functional Partners:
CCH16115.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
  
     0.741
CCH20986.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.724
CCH16299.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.720
CCH22230.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.713
CCH16169.1
Lipoprotein LpqB, beta-propeller domain-like; Function of strongly homologous gene; structure.
  
     0.701
CCH17293.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.688
CCH20788.1
Glyoxalase/bleomycin resistance protein/dioxygenase; Function of strongly homologous gene; cell process.
  
     0.688
CCH18313.1
Sulfatase; Function of strongly homologous gene; enzyme.
  
     0.679
CCH18896.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.675
CCH18373.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.672
Your Current Organism:
Micromonospora lupini
NCBI taxonomy Id: 1150864
Other names: M. lupini str. Lupac 08, Micromonospora lupini Lupac 08, Micromonospora lupini str. Lupac 08, Micromonospora lupini strain Lupac 08, Micromonospora sp. Lupac 08
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