STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH16350.1Glycosyl transferase group 1; Function of strongly homologous gene; enzyme. (354 aa)    
Predicted Functional Partners:
CCH16352.1
Putative Polysaccharide biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
    0.842
CCH16349.1
Glycosyl transferase group 1; Function of strongly homologous gene; enzyme.
       0.782
CCH16351.1
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase; Function of strongly homologous gene; enzyme.
       0.779
CCH16348.1
Glycosyl transferase, group 1; Function of strongly homologous gene; enzyme.
       0.774
CCH16346.1
Hypothetical protein; No homology to any previously reported sequences.
       0.773
wcnD
Glycosyltransferase; Function of strongly homologous gene; enzyme.
       0.773
glgB
1,4-alpha-glucan-branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.622
treZ
Malto-oligosyltrehalose trehalohydrolase; Function of strongly homologous gene; enzyme.
   
 0.607
CCH21173.1
Putative DNA helicase II homolog; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
    
   0.560
CCH16811.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
  0.536
Your Current Organism:
Micromonospora lupini
NCBI taxonomy Id: 1150864
Other names: M. lupini str. Lupac 08, Micromonospora lupini Lupac 08, Micromonospora lupini str. Lupac 08, Micromonospora lupini strain Lupac 08, Micromonospora sp. Lupac 08
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