STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfAAlpha-N-arabinofuranosidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 43 family. (504 aa)    
Predicted Functional Partners:
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.823
xlnA-4
Extracellular endo-1,4-beta-xylanase; Function of strongly homologous gene; enzyme.
 
   
 0.745
CCH19144.1
Conserved secreted hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.724
xynB
Beta-xylosidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.703
xynB-2
Alpha-L-arabinofuranosidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.702
gnl
Gluconolactonase; Function of strongly homologous gene; enzyme.
     0.670
abfA-2
Alpha-L-arabinofuranosidase; Function of strongly homologous gene; enzyme.
 
   
 0.645
CCH21542.1
Alpha-L-arabinofuranosidase; Function of strongly homologous gene; enzyme.
 
   
 0.639
CCH17511.1
Glycoside hydrolase clan GH-D (modular protein); Function of strongly homologous gene; enzyme.
 
     0.626
CCH20475.1
Extracellular cellulose-binding xylosidase; Function of strongly homologous gene; enzyme; Belongs to the glycosyl hydrolase 43 family.
   
 0.589
Your Current Organism:
Micromonospora lupini
NCBI taxonomy Id: 1150864
Other names: M. lupini str. Lupac 08, Micromonospora lupini Lupac 08, Micromonospora lupini str. Lupac 08, Micromonospora lupini strain Lupac 08, Micromonospora sp. Lupac 08
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.