SFI60141.1 protein (Amycolatopsis sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFI60141.1

Hydantoinase/oxoprolinase N-terminal region. (402 aa)

Predicted Functional Partners:

SFI60109.1

0.948

SFI60072.1

0.947

SFI60227.1

0.850

SFJ82007.1

0.782

SFJ82024.1

0.782

SFJ82081.1

0.779

SFJ81971.1

0.760

SFI94070.1

0.735

SFK35661.1

0.735

SFI60166.1

0.727

Your Current Organism:

Amycolatopsis sacchari

NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI60072.1	SFI60109.1	SAMN05421835_101154	SAMN05421835_101155	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.945
SFI60072.1	SFI60141.1	SAMN05421835_101154	SAMN05421835_101156	PucR C-terminal helix-turn-helix domain-containing protein.	Hydantoinase/oxoprolinase N-terminal region.	0.947
SFI60072.1	SFI60166.1	SAMN05421835_101154	SAMN05421835_101157	PucR C-terminal helix-turn-helix domain-containing protein.	Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.727
SFI60072.1	SFI60227.1	SAMN05421835_101154	SAMN05421835_101159	PucR C-terminal helix-turn-helix domain-containing protein.	Ribose transport system substrate-binding protein.	0.922
SFI60072.1	SFJ82007.1	SAMN05421835_101154	SAMN05421835_10936	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.447
SFI60072.1	SFJ82024.1	SAMN05421835_101154	SAMN05421835_10937	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.428
SFI60072.1	SFJ82081.1	SAMN05421835_101154	SAMN05421835_10940	PucR C-terminal helix-turn-helix domain-containing protein.	Hypothetical protein.	0.516
SFI60109.1	SFI60072.1	SAMN05421835_101155	SAMN05421835_101154	Hypothetical protein.	PucR C-terminal helix-turn-helix domain-containing protein.	0.945
SFI60109.1	SFI60141.1	SAMN05421835_101155	SAMN05421835_101156	Hypothetical protein.	Hydantoinase/oxoprolinase N-terminal region.	0.948
SFI60109.1	SFI60166.1	SAMN05421835_101155	SAMN05421835_101157	Hypothetical protein.	Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.727
SFI60109.1	SFI60227.1	SAMN05421835_101155	SAMN05421835_101159	Hypothetical protein.	Ribose transport system substrate-binding protein.	0.855
SFI60109.1	SFJ81971.1	SAMN05421835_101155	SAMN05421835_10934	Hypothetical protein.	Cytosine permease.	0.763
SFI60141.1	SFI60072.1	SAMN05421835_101156	SAMN05421835_101154	Hydantoinase/oxoprolinase N-terminal region.	PucR C-terminal helix-turn-helix domain-containing protein.	0.947
SFI60141.1	SFI60109.1	SAMN05421835_101156	SAMN05421835_101155	Hydantoinase/oxoprolinase N-terminal region.	Hypothetical protein.	0.948
SFI60141.1	SFI60166.1	SAMN05421835_101156	SAMN05421835_101157	Hydantoinase/oxoprolinase N-terminal region.	Ribose transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.727
SFI60141.1	SFI60227.1	SAMN05421835_101156	SAMN05421835_101159	Hydantoinase/oxoprolinase N-terminal region.	Ribose transport system substrate-binding protein.	0.850
SFI60141.1	SFI94070.1	SAMN05421835_101156	SAMN05421835_102251	Hydantoinase/oxoprolinase N-terminal region.	Glutamate synthase (NADPH/NADH) large chain.	0.735
SFI60141.1	SFJ81971.1	SAMN05421835_101156	SAMN05421835_10934	Hydantoinase/oxoprolinase N-terminal region.	Cytosine permease.	0.760
SFI60141.1	SFJ82007.1	SAMN05421835_101156	SAMN05421835_10936	Hydantoinase/oxoprolinase N-terminal region.	Hypothetical protein.	0.782
SFI60141.1	SFJ82024.1	SAMN05421835_101156	SAMN05421835_10937	Hydantoinase/oxoprolinase N-terminal region.	Hypothetical protein.	0.782