SFI71166.1 protein (Amycolatopsis sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFI71166.1

L-rhamnose mutarotase. (108 aa)

Predicted Functional Partners:

SFI71268.1

0.980

SFI71190.1

0.977

SFI71218.1

0.960

SFJ74465.1

0.926

SFJ74423.1

0.907

SFI71242.1

0.870

SFI71102.1

0.866

SFJ74443.1

0.832

SFK64359.1

0.764

SFI71299.1

0.757

Your Current Organism:

Amycolatopsis sacchari

NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI71102.1	SFI71166.1	SAMN05421835_101534	SAMN05421835_101535	Rhamnose transport system substrate-binding protein.	L-rhamnose mutarotase.	0.866
SFI71102.1	SFI71190.1	SAMN05421835_101534	SAMN05421835_101536	Rhamnose transport system substrate-binding protein.	L-rhamnose isomerase / sugar isomerase.	0.836
SFI71102.1	SFI71218.1	SAMN05421835_101534	SAMN05421835_101537	Rhamnose transport system substrate-binding protein.	Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.	0.822
SFI71102.1	SFI71242.1	SAMN05421835_101534	SAMN05421835_101538	Rhamnose transport system substrate-binding protein.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.781
SFI71102.1	SFI71268.1	SAMN05421835_101534	SAMN05421835_101539	Rhamnose transport system substrate-binding protein.	Rhamnulokinase.	0.833
SFI71102.1	SFI71299.1	SAMN05421835_101534	SAMN05421835_101540	Rhamnose transport system substrate-binding protein.	Hypothetical protein.	0.580
SFI71102.1	SFJ74423.1	SAMN05421835_101534	SAMN05421835_10874	Rhamnose transport system substrate-binding protein.	L-rhamnose isomerase / sugar isomerase.	0.597
SFI71102.1	SFJ74443.1	SAMN05421835_101534	SAMN05421835_10875	Rhamnose transport system substrate-binding protein.	Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.	0.568
SFI71102.1	SFJ74465.1	SAMN05421835_101534	SAMN05421835_10876	Rhamnose transport system substrate-binding protein.	Rhamnulokinase.	0.589
SFI71166.1	SFI71102.1	SAMN05421835_101535	SAMN05421835_101534	L-rhamnose mutarotase.	Rhamnose transport system substrate-binding protein.	0.866
SFI71166.1	SFI71190.1	SAMN05421835_101535	SAMN05421835_101536	L-rhamnose mutarotase.	L-rhamnose isomerase / sugar isomerase.	0.977
SFI71166.1	SFI71218.1	SAMN05421835_101535	SAMN05421835_101537	L-rhamnose mutarotase.	Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.	0.960
SFI71166.1	SFI71242.1	SAMN05421835_101535	SAMN05421835_101538	L-rhamnose mutarotase.	L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.	0.870
SFI71166.1	SFI71268.1	SAMN05421835_101535	SAMN05421835_101539	L-rhamnose mutarotase.	Rhamnulokinase.	0.980
SFI71166.1	SFI71299.1	SAMN05421835_101535	SAMN05421835_101540	L-rhamnose mutarotase.	Hypothetical protein.	0.757
SFI71166.1	SFJ74423.1	SAMN05421835_101535	SAMN05421835_10874	L-rhamnose mutarotase.	L-rhamnose isomerase / sugar isomerase.	0.907
SFI71166.1	SFJ74443.1	SAMN05421835_101535	SAMN05421835_10875	L-rhamnose mutarotase.	Rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.	0.832
SFI71166.1	SFJ74465.1	SAMN05421835_101535	SAMN05421835_10876	L-rhamnose mutarotase.	Rhamnulokinase.	0.926
SFI71166.1	SFK64359.1	SAMN05421835_101535	SAMN05421835_1277	L-rhamnose mutarotase.	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing); Belongs to the TPP enzyme family.	0.764
SFI71190.1	SFI71102.1	SAMN05421835_101536	SAMN05421835_101534	L-rhamnose isomerase / sugar isomerase.	Rhamnose transport system substrate-binding protein.	0.836