STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI71554.1DNA-binding transcriptional regulator, Lrp family. (160 aa)    
Predicted Functional Partners:
SFI95736.1
DNA-binding transcriptional regulator, Lrp family.
  
     0.772
SFI74010.1
Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein.
  
     0.771
SFK48729.1
DNA-binding transcriptional regulator, Lrp family.
  
     0.767
SFJ17955.1
DNA-binding transcriptional regulator, Lrp family.
  
     0.765
SFI56715.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
  
 
 0.600
SFI71576.1
Indolepyruvate decarboxylase.
       0.544
SFJ17986.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.524
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.