STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ07832.1Multimeric flavodoxin WrbA. (150 aa)    
Predicted Functional Partners:
SFJ07798.1
Hypothetical protein.
       0.752
SFJ07860.1
Hypothetical protein.
       0.661
hisS
histidyl-tRNA synthetase.
       0.539
SFK23999.1
P-aminobenzoate N-oxygenase AurF.
  
     0.517
SFK62965.1
LysM domain-containing protein.
   
  
 0.514
SFJ18607.1
Hypothetical protein.
   
    0.489
SFJ10632.1
Hypothetical protein.
   
    0.489
SFJ54712.1
Transmembrane protein of unknown function.
   
    0.489
SFJ33409.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.478
SFJ78041.1
Starvation-inducible DNA-binding protein; Belongs to the Dps family.
  
  
 0.478
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.