STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ43125.1Polar amino acid transport system substrate-binding protein. (306 aa)    
Predicted Functional Partners:
SFJ43143.1
Polar amino acid transport system permease protein.
 
 0.960
SFJ43229.1
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB.
 
     0.939
SFJ43261.1
Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB.
 
     0.939
SFJ43289.1
Hypothetical protein.
 
     0.920
SFJ43163.1
Polar amino acid transport system ATP-binding protein.
 
 0.911
SFJ43182.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
     0.881
SFJ57474.1
Polar amino acid transport system permease protein.
 
 0.814
SFJ43205.1
Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family.
 
     0.800
SFJ25641.1
Polar amino acid transport system permease protein.
 
 0.787
SFI74955.1
Signal transduction histidine kinase.
    
 0.692
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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