STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ52925.1Hypothetical protein. (132 aa)    
Predicted Functional Partners:
SFK01301.1
DNA-binding transcriptional regulator of glucitol operon.
  
     0.722
SFJ52949.1
Membrane carboxypeptidase (penicillin-binding protein).
     
 0.694
SFK72454.1
Hypothetical protein.
  
     0.673
SFJ52973.1
Uncharacterized membrane protein.
 
     0.659
SFK85400.1
Phage shock protein A (PspA) family protein.
  
     0.641
SFJ52903.1
DNA-binding transcriptional regulator, PadR family.
       0.607
SFK43217.1
Protein of unknown function.
  
     0.593
SFI57189.1
Transcriptional regulator, TetR family.
  
     0.586
SFJ52885.1
Myo-inositol-1-phosphate synthase.
       0.531
SFK22899.1
DivIVA domain-containing protein.
  
     0.522
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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