STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ77422.1N-acetylmuramoyl-L-alanine amidase. (211 aa)    
Predicted Functional Partners:
SFJ54178.1
N-acetylmuramoyl-L-alanine amidase.
    
0.960
SFK48128.1
MucB/RseB family protein.
    
   0.857
SFJ24192.1
Membrane associated serine protease, rhomboid family.
  
   0.700
SFJ55606.1
Membrane associated serine protease, rhomboid family.
  
   0.700
SFK71104.1
Membrane associated serine protease, rhomboid family.
  
   0.700
SFK79982.1
Hypothetical protein.
  
   0.700
SFK92912.1
Rhomboid family protein.
  
   0.700
recR
DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
     
 0.692
SFK86141.1
Cell division protein FtsW; Belongs to the SEDS family.
  
  
 0.676
SFJ98260.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.593
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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