STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK13089.1Putative membrane protein. (486 aa)    
Predicted Functional Partners:
SFK13108.1
Hypothetical protein.
 
  
 0.985
SFK13131.1
DNA-binding transcriptional regulator, ArsR family.
  
    0.775
SFK13068.1
Predicted membrane protein.
 
     0.618
SFK13148.1
ATPase, P-type (transporting), HAD superfamily, subfamily IC.
       0.563
SFK88480.1
Hypothetical protein.
 
    0.525
SFK23299.1
Hypothetical protein.
 
    0.518
SFK44300.1
Methyltransferase domain-containing protein.
  
     0.458
SFJ92194.1
Conserved domain-containing protein.
  
    0.452
SFK19912.1
Hypothetical protein.
  
    0.452
SFK13168.1
aromatic-L-amino-acid decarboxylase.
       0.449
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.