Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK03003.1 | SFK20571.1 | SAMN05421835_112135 | SAMN05421835_115191 | Superfamily II DNA or RNA helicase. | Histidine triad (HIT) family protein. | 0.691 |
SFK03003.1 | rpoB | SAMN05421835_112135 | SAMN05421835_103219 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.988 |
SFK03003.1 | rpoC | SAMN05421835_112135 | SAMN05421835_103218 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.912 |
SFK03003.1 | rpoZ | SAMN05421835_112135 | SAMN05421835_107233 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.990 |
SFK20491.1 | SFK20512.1 | SAMN05421835_115187 | SAMN05421835_115188 | Cytidine deaminase. | Hemolysin, contains CBS domains. | 0.967 |
SFK20491.1 | SFK20571.1 | SAMN05421835_115187 | SAMN05421835_115191 | Cytidine deaminase. | Histidine triad (HIT) family protein. | 0.702 |
SFK20491.1 | era | SAMN05421835_115187 | SAMN05421835_115186 | Cytidine deaminase. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.965 |
SFK20491.1 | ybeY | SAMN05421835_115187 | SAMN05421835_115189 | Cytidine deaminase. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.968 |
SFK20512.1 | SFK20491.1 | SAMN05421835_115188 | SAMN05421835_115187 | Hemolysin, contains CBS domains. | Cytidine deaminase. | 0.967 |
SFK20512.1 | SFK20571.1 | SAMN05421835_115188 | SAMN05421835_115191 | Hemolysin, contains CBS domains. | Histidine triad (HIT) family protein. | 0.663 |
SFK20512.1 | era | SAMN05421835_115188 | SAMN05421835_115186 | Hemolysin, contains CBS domains. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.966 |
SFK20512.1 | ybeY | SAMN05421835_115188 | SAMN05421835_115189 | Hemolysin, contains CBS domains. | Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.972 |
SFK20571.1 | SFK03003.1 | SAMN05421835_115191 | SAMN05421835_112135 | Histidine triad (HIT) family protein. | Superfamily II DNA or RNA helicase. | 0.691 |
SFK20571.1 | SFK20491.1 | SAMN05421835_115191 | SAMN05421835_115187 | Histidine triad (HIT) family protein. | Cytidine deaminase. | 0.702 |
SFK20571.1 | SFK20512.1 | SAMN05421835_115191 | SAMN05421835_115188 | Histidine triad (HIT) family protein. | Hemolysin, contains CBS domains. | 0.663 |
SFK20571.1 | SFK63367.1 | SAMN05421835_115191 | SAMN05421835_12683 | Histidine triad (HIT) family protein. | DNA excision repair protein ERCC-3. | 0.691 |
SFK20571.1 | cysC | SAMN05421835_115191 | SAMN05421835_13435 | Histidine triad (HIT) family protein. | Bifunctional enzyme CysN/CysC; Catalyzes the synthesis of activated sulfate. Belongs to the APS kinase family. | 0.689 |
SFK20571.1 | era | SAMN05421835_115191 | SAMN05421835_115186 | Histidine triad (HIT) family protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.700 |
SFK20571.1 | rpoB | SAMN05421835_115191 | SAMN05421835_103219 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.752 |
SFK20571.1 | rpoC | SAMN05421835_115191 | SAMN05421835_103218 | Histidine triad (HIT) family protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.784 |
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