STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK18201.1Hypothetical protein; Belongs to the pirin family. (322 aa)    
Predicted Functional Partners:
SFK18240.1
Hypothetical protein.
 
    0.853
SFK18122.1
Probable F420-dependent oxidoreductase, Rv3520c family.
  
  
 0.574
SFK18145.1
Polyketide cyclase / dehydrase and lipid transport.
 
     0.574
SFK18165.1
DNA-binding transcriptional regulator, HxlR family.
       0.564
SFJ53404.1
4,5-DOPA dioxygenase extradiol.
 
  
 0.484
SFJ30712.1
Homogentisate 1,2-dioxygenase.
     
 0.479
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.