SFK28324.1 protein (Amycolatopsis sacchari) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFK28324.1

enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (254 aa)

Predicted Functional Partners:

SFK28349.1

0.956

SFJ50564.1

0.890

SFJ83421.1

0.856

SFI75162.1

0.844

SFJ44721.1

0.817

SFK47044.1

0.817

SFI64194.1

0.786

SFJ01400.1

0.779

SFK28303.1

0.775

SFK28370.1

0.775

Your Current Organism:

Amycolatopsis sacchari

NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI64194.1	SFI75162.1	SAMN05421835_101293	SAMN05421835_101668	Amino acid adenylation domain-containing protein.	3-hydroxybutyryl-CoA dehydrogenase.	0.764
SFI64194.1	SFJ01400.1	SAMN05421835_101293	SAMN05421835_102504	Amino acid adenylation domain-containing protein.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.979
SFI64194.1	SFJ44721.1	SAMN05421835_101293	SAMN05421835_105276	Amino acid adenylation domain-containing protein.	Mycocerosic acid synthase/phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	0.999
SFI64194.1	SFJ50564.1	SAMN05421835_101293	SAMN05421835_10621	Amino acid adenylation domain-containing protein.	3-hydroxybutyryl-CoA dehydrogenase.	0.764
SFI64194.1	SFJ83421.1	SAMN05421835_101293	SAMN05421835_109108	Amino acid adenylation domain-containing protein.	Enoyl-CoA hydratase/carnithine racemase.	0.786
SFI64194.1	SFK28324.1	SAMN05421835_101293	SAMN05421835_11755	Amino acid adenylation domain-containing protein.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.786
SFI64194.1	SFK28349.1	SAMN05421835_101293	SAMN05421835_11756	Amino acid adenylation domain-containing protein.	Acyl-CoA dehydrogenase.	0.618
SFI64194.1	SFK47044.1	SAMN05421835_101293	SAMN05421835_1224	Amino acid adenylation domain-containing protein.	acyl-CoA oxidase.	0.618
SFI75162.1	SFI64194.1	SAMN05421835_101668	SAMN05421835_101293	3-hydroxybutyryl-CoA dehydrogenase.	Amino acid adenylation domain-containing protein.	0.764
SFI75162.1	SFJ01400.1	SAMN05421835_101668	SAMN05421835_102504	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	0.916
SFI75162.1	SFJ44721.1	SAMN05421835_101668	SAMN05421835_105276	3-hydroxybutyryl-CoA dehydrogenase.	Mycocerosic acid synthase/phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	0.775
SFI75162.1	SFJ50564.1	SAMN05421835_101668	SAMN05421835_10621	3-hydroxybutyryl-CoA dehydrogenase.	3-hydroxybutyryl-CoA dehydrogenase.	0.723
SFI75162.1	SFJ83421.1	SAMN05421835_101668	SAMN05421835_109108	3-hydroxybutyryl-CoA dehydrogenase.	Enoyl-CoA hydratase/carnithine racemase.	0.815
SFI75162.1	SFK28324.1	SAMN05421835_101668	SAMN05421835_11755	3-hydroxybutyryl-CoA dehydrogenase.	enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.844
SFI75162.1	SFK28349.1	SAMN05421835_101668	SAMN05421835_11756	3-hydroxybutyryl-CoA dehydrogenase.	Acyl-CoA dehydrogenase.	0.630
SFI75162.1	SFK47044.1	SAMN05421835_101668	SAMN05421835_1224	3-hydroxybutyryl-CoA dehydrogenase.	acyl-CoA oxidase.	0.431
SFJ01400.1	SFI64194.1	SAMN05421835_102504	SAMN05421835_101293	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Amino acid adenylation domain-containing protein.	0.979
SFJ01400.1	SFI75162.1	SAMN05421835_102504	SAMN05421835_101668	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxybutyryl-CoA dehydrogenase.	0.916
SFJ01400.1	SFJ44721.1	SAMN05421835_102504	SAMN05421835_105276	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	Mycocerosic acid synthase/phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.	0.980
SFJ01400.1	SFJ50564.1	SAMN05421835_102504	SAMN05421835_10621	3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.	3-hydroxybutyryl-CoA dehydrogenase.	0.919