STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK38195.1Hypothetical protein. (124 aa)    
Predicted Functional Partners:
SFK38171.1
Arsenite-transporting ATPase.
  
    0.859
SFK38215.1
Glucokinase.
       0.858
SFK38144.1
Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module.
       0.857
SFK38097.1
Hypothetical protein.
 
     0.820
SFK38120.1
Predicted phosphoesterase.
       0.808
SFK38236.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
       0.785
SFK48445.1
Hypothetical protein.
  
     0.753
SFJ53216.1
PPE-repeat protein.
  
     0.731
SFK13981.1
DivIVA domain-containing protein.
  
     0.725
SFI99088.1
Phospholipase A2.
  
     0.720
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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