STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK47875.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (251 aa)    
Predicted Functional Partners:
SFK47860.1
SnoaL-like domain-containing protein.
 
     0.840
SFI64194.1
Amino acid adenylation domain-containing protein.
  
 0.804
SFK47898.1
DNA-binding transcriptional regulator, AcrR family.
 
     0.785
SFJ44721.1
Mycocerosic acid synthase/phthiocerol/phenolphthiocerol synthesis type-I polyketide synthase C.
 
 0.755
SFI94070.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.643
SFK35661.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.643
SFJ42460.1
Cytochrome P450.
   
  0.611
SFJ81298.1
Ferredoxin-NADP reductase.
   
  0.611
SFJ11963.1
acetyl-CoA carboxylase carboxyl transferase subunit beta.
  
 
 0.572
SFK47839.1
Low temperature requirement protein LtrA.
       0.517
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.