STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK85565.1DNA-binding transcriptional regulator, LacI/PurR family. (345 aa)    
Predicted Functional Partners:
SFI94070.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.801
SFK35661.1
Glutamate synthase (NADPH/NADH) large chain.
    
 
 0.801
SFK74015.1
LacI family transcriptional regulator.
  
     0.761
SFJ74400.1
LacI family transcriptional regulator.
  
     0.755
SFI96508.1
LacI family transcriptional regulator.
  
     0.752
SFK29839.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.738
SFK85549.1
Predicted arabinose efflux permease, MFS family.
 
     0.640
SFK19327.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
     0.410
Your Current Organism:
Amycolatopsis sacchari
NCBI taxonomy Id: 115433
Other names: A. sacchari, Amycolatopsis sacchari Goodfellow et al. 2001, CIP 107029, DSM 44468, JCM 11272, KCTC 9863, NBRC 100339
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.