STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA47807.150S ribosomal protein L22; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
AKA47747.1
DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AKA47748.1
30S ribosomal protein S11; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
AKA47749.1
30S ribosomal protein S4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
AKA47750.1
30S ribosomal protein S13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.999
AKA47758.1
Translation initiation factor 1A; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AKA47760.1
Antitermination protein NusA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.999
AKA47763.1
DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
AKA47783.1
50S ribosomal protein L44; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.999
AKA47792.1
50S ribosomal protein L15; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
rpl30p
50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.999
Your Current Organism:
uncultured archaeon
NCBI taxonomy Id: 115547
Other names: u. archaeon, uncultured Archaea archaeon, uncultured archaeoote
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.