STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA48465.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)    
Predicted Functional Partners:
AKA48467.1
50S ribosomal protein L21; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.926
AKA48473.1
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.875
AKA48468.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.845
AKA48464.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.831
AKA48466.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.806
AKA48471.1
RNA-binding protein; Involved in the 3' to 5' degradation of a variety of RNA species; forms a trimer of heterodimers (hexamer) with Rrp42; Rrp41 is the catalytically active subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.806
AKA48472.1
Exonuclease; Involved in the 3' to 5' degradation of a variety of RNA species; forms a trimer of heterodimers (hexamer) with Rrp42; Rrp41 is the catalytically active subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.776
AKA48470.1
50S ribosomal protein L37; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.746
AKA48469.1
DNA-directed RNA polymerase subunit P; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.733
AKA47756.1
Similar to yeast Dim2p protein that is essential for 40S ribosomal subunit; structural studies show binding to 3' end of 16S rRNA in complex with archaeal IF2 alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.720
Your Current Organism:
uncultured archaeon
NCBI taxonomy Id: 115547
Other names: u. archaeon, uncultured Archaea archaeon, uncultured archaeoote
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.