STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKA48474.1Shwachman#Bodian#Diamond syndrome protein family; SBDS; similar to eukaryotic proteins involved in RNA metabolism or binding; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)    
Predicted Functional Partners:
AKA48470.1
50S ribosomal protein L37; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.979
fusA
Elongation factor EF-2; EF-2; EF-G; promotes GTP-dependent translocation of the ribosome during translation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.959
rpl30p
50S ribosomal protein L30; L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.954
AKA49526.1
30S ribosomal protein S8e; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.949
AKA48929.1
50S ribosomal protein L40; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.947
AKA49409.1
50S ribosomal protein L24; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.942
rpl7ae
50S ribosomal protein L7; Multifunctional protein; binds C/D boxes of sRNAs and guides RNA post-transcriptional modification; also binds KT-15 motif in 23S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.930
AKA47810.1
50S ribosomal protein L23; Binds third domain of 23S rRNA and protein L29; part of exit tunnel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.918
AKA48440.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.918
AKA47811.1
50S ribosomal protein L4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.910
Your Current Organism:
uncultured archaeon
NCBI taxonomy Id: 115547
Other names: u. archaeon, uncultured Archaea archaeon, uncultured archaeoote
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