Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AKA47747.1 | AKA47763.1 | IX51_00105 | IX51_00195 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47747.1 | AKA47764.1 | IX51_00105 | IX51_00200 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47747.1 | AKA47818.1 | IX51_00105 | IX51_00540 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.997 |
| AKA47747.1 | AKA47963.1 | IX51_00105 | IX51_01395 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor; TFIID; binds specifically to the TATA box and functions in transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.990 |
| AKA47747.1 | AKA48469.1 | IX51_00105 | IX51_04455 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit P; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47747.1 | AKA48500.1 | IX51_00105 | IX51_04625 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.993 |
| AKA47747.1 | AKA48644.1 | IX51_00105 | IX51_05510 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47747.1 | AKA48963.1 | IX51_00105 | IX51_07490 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flap endonuclease-1; FEN-1; Rad2; similar to eukaryotic enzymes; endonuclease that cleave the 5'overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'end of a downstream Okazaki fragment; as 5'endo-/exonuclease and 5'pseudo-Y-endonuclease activities; cleaves the junction between single and double-stranded regions of flap DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.426 |
| AKA47747.1 | rpoK | IX51_00105 | IX51_02120 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit K; Promotes RNAP assembly or increases stability; similar to eukaryotic RPB6 and bacterial subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47747.1 | tfb | IX51_00105 | IX51_06705 | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter; responsible for recruiting RNA polymerase II to the pre-initiation complex; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.965 |
| AKA47763.1 | AKA47747.1 | IX51_00195 | IX51_00105 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit D; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47763.1 | AKA47764.1 | IX51_00195 | IX51_00200 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit H; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47763.1 | AKA47818.1 | IX51_00195 | IX51_00540 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.993 |
| AKA47763.1 | AKA47963.1 | IX51_00195 | IX51_01395 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor; TFIID; binds specifically to the TATA box and functions in transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.990 |
| AKA47763.1 | AKA48469.1 | IX51_00195 | IX51_04455 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit P; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47763.1 | AKA48500.1 | IX51_00195 | IX51_04625 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.986 |
| AKA47763.1 | AKA48644.1 | IX51_00195 | IX51_05510 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit M; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47763.1 | AKA48963.1 | IX51_00195 | IX51_07490 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | Flap endonuclease-1; FEN-1; Rad2; similar to eukaryotic enzymes; endonuclease that cleave the 5'overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'end of a downstream Okazaki fragment; as 5'endo-/exonuclease and 5'pseudo-Y-endonuclease activities; cleaves the junction between single and double-stranded regions of flap DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.771 |
| AKA47763.1 | rpoK | IX51_00195 | IX51_02120 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | DNA-directed RNA polymerase subunit K; Promotes RNAP assembly or increases stability; similar to eukaryotic RPB6 and bacterial subunit omega; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| AKA47763.1 | tfb | IX51_00195 | IX51_06705 | DNA-directed RNA polymerase subunit B; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. The beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription initiation factor IIB; Stabilizes TBP binding to an archaeal box-A promoter; responsible for recruiting RNA polymerase II to the pre-initiation complex; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.957 |
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