STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHJ52019.1Phage-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)    
Predicted Functional Partners:
KHJ52017.1
Cytotoxic translational repressor of toxin-antitoxin stability system; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.584
KHJ52104.1
Antitoxin YefM; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
  
 0.569
KHJ50798.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.557
KHJ52018.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.534
KHJ50547.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.515
vapC
Plasmid maintenance protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
 
   
 0.510
KHJ51309.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.509
KHJ52105.1
Toxin YoeB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.455
KHJ52016.1
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.438
KHJ51310.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.436
Your Current Organism:
Halomonas hydrothermalis
NCBI taxonomy Id: 115561
Other names: ATCC BAA-800, CECT 5814, DSM 15725, H. hydrothermalis, Halomonas hydrothermalis Kaye et al. 2004, Halomonas sp. Slthf2.1878c, strain Slthf2
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