STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHJ51475.130S ribosomal protein S6 modification protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (278 aa)    
Predicted Functional Partners:
KHJ51474.1
Gonadoliberin III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.917
KHJ51473.1
alpha-L-glutamate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.912
rimK
Ribosomal protein S6 modification protein; Responsible for the addition of glutamate residues to the C-terminus of ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RimK family.
 
     0.763
hisI
phosphoribosyl-AMP cyclohydrolase; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.
       0.749
KHJ51470.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.686
fur
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
       0.684
KHJ52026.1
Succinylglutamate desuccinylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.661
KHJ51476.1
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.500
KHJ52703.1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.459
Your Current Organism:
Halomonas hydrothermalis
NCBI taxonomy Id: 115561
Other names: ATCC BAA-800, CECT 5814, DSM 15725, H. hydrothermalis, Halomonas hydrothermalis Kaye et al. 2004, Halomonas sp. Slthf2.1878c, strain Slthf2
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