STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHJ49853.1Tricarboxylate transporter family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (503 aa)    
Predicted Functional Partners:
KHJ49854.1
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.935
KHJ51190.1
Tricarboxylic transport membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.840
KHJ52590.1
Bordetella uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.835
KHJ52669.1
C4-dicarboxylate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.835
KHJ52558.1
Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.835
KHJ52175.1
Bordetella uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.835
KHJ49839.1
Bordetella uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.835
KHJ52559.1
Receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.834
KHJ52297.1
Bordetella uptake protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.833
KHJ52597.1
Tricarboxylate transport protein TctC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.831
Your Current Organism:
Halomonas hydrothermalis
NCBI taxonomy Id: 115561
Other names: ATCC BAA-800, CECT 5814, DSM 15725, H. hydrothermalis, Halomonas hydrothermalis Kaye et al. 2004, Halomonas sp. Slthf2.1878c, strain Slthf2
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