STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrkDTranscriptional repressor rcnR. (86 aa)    
Predicted Functional Partners:
mtlR
Putative transcriptional regulator.
   
    0.712
copA
Cu2+-exporting ATPase.
  
  
 0.624
lmrB
Putative MFS-type transporter ycnB; Belongs to the major facilitator superfamily.
      
 0.576
BANAU_0638
Cytosolic protein.
      
 0.576
BANAU_0515
Putative glutamine amidotransferase.
   
    0.572
yrkE
Putative protein yrkE.
       0.540
BANAU_0457
Putative rhodanese-like domain protein.
       0.474
pcoD
Copper resistance protein D.
     
 0.473
yrkH
Hydroxyacylglutathione hydrolase.
     
 0.464
copZ
Hypothetical protein.
 
  
 0.451
Your Current Organism:
Bacillus velezensis YAUB9601Y2
NCBI taxonomy Id: 1155777
Other names: B. velezensis YAU B9601-Y2, Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2, Bacillus methylotrophicus YAU B9601-Y2, Bacillus velezensis YAU B9601-Y2
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