STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yonJSPBc2 prophage-derived uncharacterized protein yonJ. (413 aa)    
Predicted Functional Partners:
BANAU_1747
Hypothetical protein.
       0.773
yonK
SPBc2 prophage-derived uncharacterized protein yonK.
       0.762
BANAU_1745
SPBc2 prophage-derived uncharacterized protein yonH.
  
    0.756
BANAU_1743
Hypothetical protein.
  
    0.678
BANAU_1746
Hypothetical protein.
       0.658
nrdE3
Ribonucleoside-diphosphate reductase alpha chain.
   
    0.535
yomX3
SPBc2 prophage-derived uncharacterized protein yomX.
   
    0.444
yomN3
SPBc2 prophage-derived uncharacterized protein yomN.
   
    0.430
yorF
SPBc2 prophage-derived uncharacterized protein yorF.
   
    0.400
Your Current Organism:
Bacillus velezensis YAUB9601Y2
NCBI taxonomy Id: 1155777
Other names: B. velezensis YAU B9601-Y2, Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2, Bacillus methylotrophicus YAU B9601-Y2, Bacillus velezensis YAU B9601-Y2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.