STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EL26_18820LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
EL26_04860
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.843
EL26_07520
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.828
EL26_14315
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.828
EL26_01065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.782
EL26_18815
Catalyzes the transamination of the aromatic amino acid forming a ketoacid; first step in aromatic amino acid degradation in lactococci; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.754
EL26_17310
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.751
EL26_14970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.750
EL26_07495
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
   0.738
EL26_07500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.738
EL26_07505
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.738
Your Current Organism:
Tumebacillus flagellatus
NCBI taxonomy Id: 1157490
Other names: CGMCC 1.12170, DSM 25748, T. flagellatus, Tumebacillus flagellatus Wang et al. 2013, Tumebacillus sp. NFB, strain GST4
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