STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ32738.1Paraquat-inducible protein A. (211 aa)    
Predicted Functional Partners:
SJZ32709.1
Paraquat-inducible protein B.
  
 0.993
SJZ32702.1
Hypothetical protein.
 
  
 0.963
SJZ32760.1
Paraquat-inducible protein A.
 
    
0.847
SJZ32694.1
Hypothetical protein; Belongs to the CvfB family.
       0.768
SJZ32771.1
Hypothetical protein.
  
    0.531
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
       0.527
SJZ32781.1
Cupin fold metalloprotein, WbuC family.
       0.527
SJZ32804.1
Hypothetical protein.
       0.527
SKA08410.1
Glycine-zipper containing OmpA-like membrane domain-containing protein.
  
     0.436
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.