STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ39040.1Transcriptional regulatory protein RtcR. (535 aa)    
Predicted Functional Partners:
rtcA
RNA 3'-terminal phosphate cyclase (ATP); Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.
 
  
 0.862
SJZ38972.1
tRNA-splicing ligase RtcB.
 
   
 0.791
SJZ55686.1
VWA domain containing CoxE-like protein.
 
   
 0.633
SJZ53318.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.
  
     0.559
SKA00025.1
Signal transduction histidine kinase.
  
     0.551
SJZ55673.1
Hypothetical protein.
  
     0.547
SJZ55651.1
MoxR-like ATPase.
  
     0.540
SJZ55625.1
WGR domain-containing protein, predicted DNA-binding domain in MolR.
  
     0.526
SJZ53346.1
Phosphatidate cytidylyltransferase; Belongs to the CDS family.
  
     0.523
SJZ39081.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
       0.519
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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