STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ40034.1tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA. (151 aa)    
Predicted Functional Partners:
SJZ40083.1
Nicotinamidase-related amidase.
       0.706
SJZ40053.1
Glyoxylase, beta-lactamase superfamily II.
       0.701
SJZ40068.1
4-oxalocrotonate tautomerase.
       0.701
SJZ40019.1
Predicted DNA-binding protein, MmcQ/YjbR family.
       0.651
SJZ40098.1
Transcriptional regulator, AraC family with amidase-like domain.
       0.490
SJZ40005.1
Hypothetical protein.
       0.424
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.