STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ43029.1Serine/threonine-protein kinase HipA. (430 aa)    
Predicted Functional Partners:
SJZ43014.1
Transcriptional regulator, XRE family.
 
     0.950
SKA01996.1
Helix-turn-helix.
 
 
 0.767
SJZ35922.1
Helix-turn-helix.
   
 
 0.639
SJZ92146.1
Helix-turn-helix.
   
 
 0.639
SKA17346.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
   
 
 0.639
SJZ32937.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.581
SJZ37401.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.581
SKA24373.1
Helix-turn-helix.
  
 
 0.581
SJZ67732.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.568
SJZ91241.1
Helix-turn-helix.
  
 
 0.568
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.