STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ44502.1Integrase/recombinase XerC; Belongs to the 'phage' integrase family. (362 aa)    
Predicted Functional Partners:
SJZ44519.1
Hypothetical protein.
       0.773
SJZ41627.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
  0.708
SKA02707.1
Acyl transferase domain-containing protein.
  
 0.555
SJZ33256.1
Flagellar basal-body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
    
   0.534
SJZ96518.1
Prephenate dehydrogenase.
  
    0.530
SJZ83050.1
comF family protein.
   
    0.529
SJZ44760.1
Von Willebrand factor type A domain-containing protein.
  
     0.525
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.523
SJZ35558.1
DNA translocase FtsK.
 
   
 0.509
SKA19556.1
Integron integrase; Belongs to the 'phage' integrase family.
  
     0.489
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.