STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ52038.1Predicted nucleic acid-binding protein, contains PIN domain. (135 aa)    
Predicted Functional Partners:
SJZ51982.1
HicB family protein.
 
     0.953
SJZ37600.1
PIN domain nuclease, a component of toxin-antitoxin system (PIN domain).
  
   
 0.574
SKA21108.1
Uncharacterized conserved protein, DUF4415 family.
  
     0.568
SJZ87758.1
Hypothetical protein.
  
   
 0.506
SJZ51965.1
Hypothetical protein.
       0.485
SKA21099.1
Predicted transcriptional regulator.
  
     0.485
vapC-2
Predicted nucleic-acid-binding protein, contains PIN domain; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.484
SJZ56844.1
Putative transcriptional regulator.
  
     0.452
SKA06270.1
Antitoxin VapB.
  
   
 0.444
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.