STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ55625.1WGR domain-containing protein, predicted DNA-binding domain in MolR. (1378 aa)    
Predicted Functional Partners:
SJZ55673.1
Hypothetical protein.
 
     0.876
SJZ55686.1
VWA domain containing CoxE-like protein.
 
     0.871
SJZ55651.1
MoxR-like ATPase.
     0.870
SJZ39040.1
Transcriptional regulatory protein RtcR.
  
     0.526
SJZ55598.1
Signal peptidase I; Belongs to the peptidase S26 family.
       0.503
SJZ44355.1
Hypothetical protein.
  
     0.491
SJZ55696.1
SWIM zinc finger.
       0.474
SJZ57139.1
Glycosyltransferase involved in cell wall bisynthesis.
  
     0.418
SJZ38972.1
tRNA-splicing ligase RtcB.
  
     0.417
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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