STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ64553.1Ferredoxin III, nif-specific. (87 aa)    
Predicted Functional Partners:
SJZ71425.1
NAD(P)-dependent nickel-iron dehydrogenase flavin-containing subunit.
  
 0.999
SJZ51829.1
Ni,Fe-hydrogenase III large subunit.
  
 0.996
SJZ41627.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.995
SJZ64532.1
Nitrogen fixation protein NifX.
 
  
 0.994
SJZ99892.1
Mo-nitrogenase MoFe protein subunit NifK; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.985
SKA15186.1
Nitrogen fixation protein NifX.
 
  
 0.983
SJZ61985.1
NADH-quinone oxidoreductase subunit F.
  
 0.978
SJZ64601.1
Predicted Fe-Mo cluster-binding protein, NifX family.
 
  
 0.974
SKA02707.1
Acyl transferase domain-containing protein.
  
 0.970
SJZ99978.1
Nitrogenase molybdenum-cofactor synthesis protein NifE; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.968
Your Current Organism:
Geobacter thiogenes
NCBI taxonomy Id: 115783
Other names: ATCC BAA-34, G. thiogenes, Geobacter thiogenes (De Wever et al. 2001) Nevin et al. 2007, JCM 14045, Trichlorobacter thiogenes, Trichlorobacter thiogenes De Wever et al. 2001, strain K1
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